PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G05620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 254aa    MW: 26923.4 Da    PI: 4.0413
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G05620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC44.14.5e-1413121517100
            NF-YC  17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr.tdifdflvdivprde 100
                      ++ +lPl r+k+i+++d d+k+++ ea  l++ a elf+  l+  +   a    rr+++   + aa  +   + dfl+d  p  e
  OMERI01G05620.1 131 QRPALPLGRVKRIIRVDRDIKKVTNEAALLIAAATELFLGSLAAGAHRAASRRGRRAVRAVHVRAAAREhRPTADFLLDCLPAAE 215
                      4668***********************************************************98876515699*****999765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.68E-14132214IPR009072Histone-fold
PfamPF008086.5E-13135196IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.106.6E-17135212IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAAAAVADEV TEAMEQVEGE REEADAVADE AAEVMEQAEG EWEEANAMAD EAAEAMEPEG  60
EREEEEEADA VADEAAEAME PEGEREEEEE ADAVTDEAAE AMEQVDAVAD EATKPMEQVE  120
GEGEDGDAAA QRPALPLGRV KRIIRVDRDI KKVTNEAALL IAAATELFLG SLAAGAHRAA  180
SRRGRRAVRA VHVRAAAREH RPTADFLLDC LPAAEEAAPA RAAAAGPRGG GGRGEAKPLP  240
RGTRRIDAFF QKTT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0024840.0AP002484.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0489A01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643497.13e-92PREDICTED: tropomyosin
TrEMBLA0A0E0BYA91e-168A0A0E0BYA9_9ORYZ; Uncharacterized protein
STRINGLOC_Os01g08790.19e-92(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133422628